PmWiki.HPCGuide History

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February 18, 2012, at 05:29 AM by 128.122.47.59 -
Changed line 9 from:

ssh -L 8020:usq:22 rdf7@hpc.nyu.edu\\

to:

ssh -L 8020:usq:22 -XY rdf7@hpc.nyu.edu\\

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February 18, 2012, at 05:27 AM by 128.122.47.59 -
Added lines 15-16:

ssh -L 8022:rose1.cs.nyu.edu:22 fergus@access.cims.nyu.edu
scp -P 8022 filename fergus@localhost:~/.

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February 17, 2012, at 09:56 PM by 128.122.47.59 -
Changed line 19 from:

qsub -I -q interactive -l nodes=1:ppn=1,walltime=04:00:00\\

to:

qsub -I -X -q interactive -l nodes=1:ppn=1,walltime=04:00:00\\

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February 17, 2012, at 09:55 PM by 128.122.47.59 -
Changed lines 9-12 from:

1. ssh -L 8020:usq:22 rdf7@hpc.nyu.edu
2. scp -P 8020 filename rdf7@localhost:~/

to:

ssh -L 8020:usq:22 rdf7@hpc.nyu.edu
scp -P 8020 filename rdf7@localhost:~/

Changed lines 18-19 from:

Get an interactive terminal and start Matlab: qsub -I -q interactive -l nodes=1:ppn=1,walltime=04:00:00 \\

to:

Get an interactive terminal and start Matlab:
qsub -I -q interactive -l nodes=1:ppn=1,walltime=04:00:00\\

Changed lines 29-31 from:

qdel all

qstat -q ser2

to:

Delete all jobs
qdel all

Status of standard queue
qstat -q ser2

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February 17, 2012, at 09:54 PM by 128.122.47.59 -
Changed lines 3-4 from:

ssh -XY rdf7@hpc.es.its.nyu.edu

to:

ssh -XY rdf7@hpc.es.its.nyu.edu \\

Changed lines 9-10 from:

1. ssh -L 8020:usq:22 rdf7@hpc.nyu.edu

to:

1. ssh -L 8020:usq:22 rdf7@hpc.nyu.edu\\

Changed lines 19-20 from:

qsub -I -q interactive -l nodes=1:ppn=1,walltime=04:00:00 module load matlab/R2011a

to:

qsub -I -q interactive -l nodes=1:ppn=1,walltime=04:00:00
module load matlab/R2011a\\

Changed line 23 from:

List all my job in the queue

to:

List all my job in the queue \\

Changed line 26 from:

Delete job

to:

Delete job\\

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February 17, 2012, at 09:53 PM by 128.122.47.59 -
Changed lines 3-4 from:

ssh -XY rdf7@hpc.es.its.nyu.edu

to:

ssh -XY rdf7@hpc.es.its.nyu.edu

Changed lines 10-14 from:

1. ssh -L 8020:usq:22 rdf7@hpc.nyu.edu

2. scp -P 8020 filename rdf7@localhost:~/.

to:

1. ssh -L 8020:usq:22 rdf7@hpc.nyu.edu

2. scp -P 8020 filename rdf7@localhost:~/

Changed lines 21-27 from:

@@ qsub -I -q interactive -l nodes=1:ppn=1,walltime=04:00:00 module load matlab/R2011a matlab -nodesktop -nosplash @@

showq | grep rdf7

qdel jobid

to:

qsub -I -q interactive -l nodes=1:ppn=1,walltime=04:00:00 module load matlab/R2011a matlab -nodesktop -nosplash

List all my job in the queue showq | grep rdf7

Delete job qdel jobid

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February 17, 2012, at 09:52 PM by 128.122.47.59 -
Changed lines 3-4 from:

ssh -XY rdf7@hpc.es.its.nyu.edu ssh -XY rdf7@usq.es.its.nyu.edu

to:

ssh -XY rdf7@hpc.es.its.nyu.edu ssh -XY rdf7@usq.es.its.nyu.edu

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February 17, 2012, at 09:52 PM by 128.122.47.59 -
Added line 3:

ssh -XY rdf7@hpc.es.its.nyu.edu

Changed lines 19-22 from:

qsub -I -q interactive -l nodes=1:ppn=1,walltime=04:00:00

to:

Get an interactive terminal and start Matlab: @@ qsub -I -q interactive -l nodes=1:ppn=1,walltime=04:00:00 module load matlab/R2011a matlab -nodesktop -nosplash @@

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February 17, 2012, at 09:47 PM by 128.122.47.59 -
Added lines 1-5:

Login to HPC

ssh -XY rdf7@usq.es.its.nyu.edu

Added lines 17-18:

qsub -I -q interactive -l nodes=1:ppn=1,walltime=04:00:00

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February 17, 2012, at 09:41 PM by 128.122.47.59 -
Deleted line 0:
Changed lines 3-5 from:

ssh -L 8020:usq:22 NetID@hpc.nyu.edu

scp -P 8020 filename NetID@localhost:~/.

to:

1. ssh -L 8020:usq:22 rdf7@hpc.nyu.edu

2. scp -P 8020 filename rdf7@localhost:~/.

Copying data back from HPC

Queue commands

showq | grep rdf7

qdel jobid

qdel all

qstat -q ser2

Useful Links

HPC Queues

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February 17, 2012, at 09:09 PM by 128.122.47.59 -
Added lines 1-6:

Copying data to HPC

ssh -L 8020:usq:22 NetID@hpc.nyu.edu

scp -P 8020 filename NetID@localhost:~/.

Restore