PmWiki.HPCGuide History

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February 18, 2012, at 05:29 AM by 128.122.47.59 -
Changed line 9 from:
@@ssh -L 8020:usq:22 rdf7@hpc.nyu.edu@@\\
to:
@@ssh -L 8020:usq:22 -XY rdf7@hpc.nyu.edu@@\\
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February 18, 2012, at 05:27 AM by 128.122.47.59 -
Added lines 15-16:
@@ssh -L 8022:rose1.cs.nyu.edu:22 fergus@access.cims.nyu.edu@@\\
@@scp -P 8022 filename fergus@localhost:~/.@@
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February 17, 2012, at 09:56 PM by 128.122.47.59 -
Changed line 19 from:
@@qsub -I -q interactive -l nodes=1:ppn=1,walltime=04:00:00@@\\
to:
@@qsub -I -X -q interactive -l nodes=1:ppn=1,walltime=04:00:00@@\\
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February 17, 2012, at 09:55 PM by 128.122.47.59 -
Changed lines 9-12 from:
1. @@ssh -L 8020:usq:22 rdf7@hpc.nyu.edu@@\\
2. @@scp -P 8020 filename rdf7@localhost:~/@@

to:
@@ssh -L 8020:usq:22 rdf7@hpc.nyu.edu@@\\
@@scp -P 8020 filename rdf7@localhost:~/@@

Changed lines 18-19 from:
Get an interactive terminal and start Matlab:
@@qsub -I -q interactive -l nodes=1:ppn=1,walltime=04:00:00@@ \\
to:
Get an interactive terminal and start Matlab:\\
@@qsub -I -q interactive -l nodes=1:ppn=1,walltime=04:00:00@@\\
Changed lines 29-31 from:
qdel all

qstat -q ser2
to:
Delete all jobs\\
@@qdel all@@

Status of standard queue\\
@@qstat -q ser2@@
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February 17, 2012, at 09:54 PM by 128.122.47.59 -
Changed lines 3-4 from:
@@ssh -XY rdf7@hpc.es.its.nyu.edu@@
to:
@@ssh -XY rdf7@hpc.es.its.nyu.edu@@ \\
Changed lines 9-10 from:
1. @@ssh -L 8020:usq:22 rdf7@hpc.nyu.edu@@
to:
1. @@ssh -L 8020:usq:22 rdf7@hpc.nyu.edu@@\\
Changed lines 19-20 from:
@@qsub -I -q interactive -l nodes=1:ppn=1,walltime=04:00:00@@
@@module load matlab/R2011a@@
to:
@@qsub -I -q interactive -l nodes=1:ppn=1,walltime=04:00:00@@ \\
@@module load matlab/R2011a@@\\
Changed line 23 from:
List all my job in the queue
to:
List all my job in the queue \\
Changed line 26 from:
Delete job
to:
Delete job\\
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February 17, 2012, at 09:53 PM by 128.122.47.59 -
Changed lines 3-4 from:
@@ssh -XY rdf7@hpc.es.its.nyu.edu@@
to:
@@ssh -XY rdf7@hpc.es.its.nyu.edu@@ 
Changed lines 10-14 from:
1. ssh -L 8020:usq:22 rdf7@hpc.nyu.edu

2. scp -P 8020 filename rdf7@localhost:~/.

to:
1. @@ssh -L 8020:usq:22 rdf7@hpc.nyu.edu@@

2. @@scp -P 8020 filename rdf7@localhost:~/@@

Changed lines 21-27 from:
@@ qsub -I -q interactive -l nodes=1:ppn=1,walltime=04:00:00
module load matlab/R2011a
matlab -nodesktop -nosplash @@

showq | grep rdf7

qdel jobid
to:
@@qsub -I -q interactive -l nodes=1:ppn=1,walltime=04:00:00@@
@@module load matlab/R2011a@@
@@matlab -nodesktop -nosplash@@

List all my job in the queue
@@showq | grep rdf7@@

Delete job
@@qdel jobid@@
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February 17, 2012, at 09:52 PM by 128.122.47.59 -
Changed lines 3-4 from:
ssh -XY rdf7@hpc.es.its.nyu.edu
ssh -XY rdf7@usq.es.its.nyu.edu
to:
@@ssh -XY rdf7@hpc.es.its.nyu.edu@@
@@ssh -XY rdf7@usq.es.its.nyu.edu@@
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February 17, 2012, at 09:52 PM by 128.122.47.59 -
Added line 3:
ssh -XY rdf7@hpc.es.its.nyu.edu
Changed lines 19-22 from:
qsub -I -q interactive -l nodes=1:ppn=1,walltime=04:00:00
to:
Get an interactive terminal and start Matlab:
@@ qsub -I -q interactive -l nodes=1:ppn=1,walltime=04:00:00
module load matlab/R2011a
matlab -nodesktop -nosplash @@
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February 17, 2012, at 09:47 PM by 128.122.47.59 -
Added lines 1-5:
!! Login to HPC

ssh -XY rdf7@usq.es.its.nyu.edu

Added lines 17-18:

qsub -I -q interactive -l nodes=1:ppn=1,walltime=04:00:00
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February 17, 2012, at 09:41 PM by 128.122.47.59 -
Deleted line 0:
Changed lines 3-5 from:
ssh -L 8020:usq:22 NetID@hpc.nyu.edu

scp -P 8020 filename NetID@localhost:~/.
to:
1. ssh -L 8020:usq:22 rdf7@hpc.nyu.edu

2. scp -P 8020 filename rdf7@localhost:~/.


!! Copying data back from HPC


!! Queue commands

showq | grep rdf7

qdel jobid

qdel all

qstat -q ser2


!! Useful Links

[[https://wikis.nyu.edu/display/NYUHPC/Queues | HPC Queues ]]
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February 17, 2012, at 09:09 PM by 128.122.47.59 -
Added lines 1-6:

!! Copying data to HPC

ssh -L 8020:usq:22 NetID@hpc.nyu.edu

scp -P 8020 filename NetID@localhost:~/.
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