NetMatch by Example
Find all feed-forward loops in galFiltered.xgmml network
1) Load GalFiltered.xgmml file from Cytoscape File menu (it is in sampleData directory). |
2) Run NetMatch. |
3) Select drawing tool. |
4) Select "Feed Forward Loop" from the Motifs panel. |
5) Click on drawing canvas with left mouse button. This will add a Feed Forward loop. |
6) Click on "Pass to NetMatch" button to upload the query to NetMatch main window. It is also possible to save the query or change its name. The drawing tool window can be closed or can be left opened for other modifications. |
7) Make sure from the Query Properties box the new query (QE-unnamed_1) is selected. |
8) Make sure from the Network Properties box "Yeast Network (galfiltered.gml)" is selected. |
9) Click the "Go" button to start the matching. |
10) The result is showed in the upper left panel. By clicking on a match, the corresponding nodes and edges will be highlighted in the Cytoscape main window. |