Bioniformatics:
CSCI-GA.3033-004
- Lecturers:
-
Professor
B. Mishra
Office Hours: By appt.
Office Phone: 212.998.3464
Email Address: mishra@nyu.edu
- Day and Time:
-
Mondays, 5:00-6:50pm EST, 719BWY 1221.
- Credits for Course:
-
3
- Prerequisites:
-
Mathematical Maturity, Combinatorics, Statistics and
Algorithms Design
- Syllabus:
-
Introduction to Biology: Genome, Central Dogma, RNA, DNA, Proteins
and Cell
-
Genome Structure, Genome Evolution, Fitness and Somatic Evolution (and
models)
-
Genomes: Maps (Genetic and Physical), Sequences, Sequence Assembly,
Resequencing, Analysis of Mutations, Epigenomics
-
Cancer biomarkers: GWAS, multiple hypotheses testing, false discovery
rate control
-
RNA, miRNA, and Proteins, Pathways, Networks, eQTL and Network
Genetics
-
Signaing, Hallmarks and Cancer Progression
-
Models of Progression, and Phenomenological Models
-
Cancer Pharmacogenomics and Therapeutics
- Required Text(s):
-
-
An Introduction to Bioinformatics Algorithms (Computational
Molecular Biology), Neil C. Jones & Pavel A. Pevzner, The MIT
Press, 2004. ISBN-10: 0262101068, ISBN-13: 978-0262101066.
- Recommended Text(s):
-
-
Molecular
Biology Notes on the web
-
Principles of Genome Analysis and Genomics,
by S.B. Primrose & R.M.Twyman,
Blackwell Science, ISBN 1-4051-0120-2.
-
Biology of Cancer, Robert A. Weinberg, Garland Science, 2006
- Midterm Date:
-
No Midterm.
- Final Date:
-
Class Project.
- Homework(s):
-
Class Presentation.
Bud Mishra
September 1 2003