Interesting problems usually can't be solved in closed form or using polynomial algorithms. Shipping companies must exploit non-linear constraints involving profit margins, demand, and volume, and still keep the boats moving. The same goes for optimal substring search for microarray design or optimal DNA design. The people who program the practical solutions to these problems comprise the elite of their technical organization. They combine versatality, imagination, and programming talent. I call them omniheurists -- solvers of all problems.
This course aims to develop your skills as an omniheurist. We will study problems that require heuristics and approximation algorithms. The heuristics include branch and bound, simulated annealing, tabu searching, evolutionary algorithms, and adaptive gradient methods. Approximation algorithms to NP-complete problems will help for subproblems. The problems take minutes to explain but the challenge they pose will keep you busy in a creative way for several hours. I don't promise an easy course, but I believe you will enjoy this class and find it useful.
The goal of this course is to train you to face a new problem, integrate techniques you have learned, arrive at a solution rapidly, and be able to demonstrate (experimentally and sometimes competitively) that the solution is both efficient and close to the best possible.
Prerequsities: this is a course for students who can think creatively about algorithms and are willing to prototype them. I will spend an hour teaching the prototyping language I use (for all of my research) but you are free to use any you like (e.g. MatLab, python, perl, even C).
In the fall of 2004, course problems will be drawn from biological computing, chemistry, geometry, and operations research. I will present all necessary domain knowledge in each case. We will have in-class friendly competitions in which the winner receives a small piece of chocolate as a prize. The competitions will involve adversarial games or competitive solutions. For example, you might have to achieve a goal in the context of an adversary who can cause failures or otherwise try to thwart you. The biological computing projects will involve combinatorial problems having to do with verifying DNA sequences using Crick-Watson pairing, the planning of dance movements, the use of combinatorial design for experiments, and and so on. At the end, you will be able to face a difficult problem in an area where the domain is not familiar to you, but still be able to contribute a computational solution. You will also learn how to explain your solutions to a small group (because I will make you do it here).
Depending on the size of the class, you will work alone or in a team of two. In some cases the problem will be an as yet unanalyzed game and your team's task will be to compete with other teams. The games are games of strategy and full information. A side effect of each effort will be an evolving "Omniheurist" website that we expect will get many visitors over the years. Sometimes, you will have a design problem, but in all cases you will work as a member of your team.
This is hands-on computer science. I will lecture only on a few topics -- game-playing in AI, a prototyping language K , a description of the puzzles, heuristic techniques, and approximation algorithms for NP-complete problems. I will also serve mostly as a moderator for class discussion. You will be graded on how your program works, on your insights in class, and on your verbal explanation of the strategies you use. Attendance is therefore mandatory unless you have a written excuse from a physician or an employer.
Similar courses have been given by Donald Knuth at Stanford and Ken Ross at Columbia.
To take the class, you should love challenging puzzles, enjoy rapid prototyping, and have some sense of concurrent programming. You will like the class if you think algorithmically and enjoy translating algorithms into programs. Formally, the only requirement is Fundamental Algorithms or its equivalent. You should have done well however.
For each problem, there will be three relevant classes: Presentation, Discussion, and Competition. So, on class i, I will present problem k, we will discuss k in class i+1 (when problem k+1 will be presented), and there will be a competition for k in class i+2 (when problem k+1 will be discussed and problem k+2 presented). You may have to read the above twice to get it.
For each problem, there will be an Architecture team and Competing Teams. These will be assigned on Presentation night.
Your programs must run and you must have a cogent explanation for what you have done. There are no exams, no papers, and only rare excuses. I expect you to spend about 10 hours a week programming, but you may require more or less.
Game playing in Artificial Intelligence from the paper by Pantel: "Advanced Adversary Search Algorithms"
Heuristic search algorithm from AI A* description by Justin Heyes-Jones
Genetic Algorithms Tutorial and an example of a genetic algorithm for the knapsack problem implemented in K. Here you can find a genetic algorithm used for compiler optimization.
Chris Poultney's Voronoi game implementation
Here is how to call C from K: Don Orth's description of how to call C from K.
Here is a powerpoint overview of the game framework in php by Alberto Lerner . Here is a text description of php and here are the php pages themselves for tic-tac-toe.
Here is Tyler Neylon's code for the knapsack that performs evolutionary algorithms on general chromosome structures.
Web page of linear and non-linear programming optimization case studies. Try diet and cutting stock optimization. Portfolio optimization is also interesting if you believe the assumptions. You can find implementation considerations in Karla Hoffman article on combinatorial optimization using linear, integer and non-linear programming. A general reference can be found here. A very nice discussion of the relationship among machine learning, evolutionary computation, and data mining can be found here. An excellent site describing research in optimization/operations research can be found here.
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